PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03620A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 268aa    MW: 29320 Da    PI: 5.0846
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03620AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-07109134326
                                S---SGGGGTS...--TTTTT-SS-SS CS
                    zf-CCCH   3 telCrffartG...tCkyGdrCkFaHg 26 
                                 e+C++f+r      C++G+ C+FaHg
  Oropetium_20150105_03620A 109 GEPCPDFRR-RpgaACPRGNACPFAHG 134
                                689****99.558*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.76107136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5107138IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5110134IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MVSRDYAHDY EHLVLDPAAL GVSSWADPAA VEIPPQLLAA LGEYLSSGRC GGDGDAEAEE  60
AEADDEFMMY EFKVRRCARA RSHDWTACPY AHPGEAARRR DPRRAVYTGE PCPDFRRRPG  120
AACPRGNACP FAHGTFELWL HPSRYRTRPC RAGVSCRRRV CFFAHTAAEL RAAAAPGKEE  180
SPLSLSLSPK STLASLWESP PVSPVQGRRW IEDEPDADAA ELEDLMLAMR ELSFRKAVAS  240
SSAPPPVLPL VTEDDGPDLG WVSDLVM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03620A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303637.11e-146zinc finger CCCH domain-containing protein 37-like
SwissprotQ65X921e-132C3H37_ORYSJ; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A1Z5R4P21e-144A0A1Z5R4P2_SORBI; Uncharacterized protein
STRINGGRMZM2G004795_P011e-133(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112091926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.22e-44C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]