PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03770A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ZF-HD
Protein Properties Length: 245aa    MW: 27190.1 Da    PI: 9.6552
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03770AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer83.23e-263385357
                ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                               + rY+eCl+NhAa+lGgh+vDGCgEfmp            CaACgCHR+FHR++ 
  Oropetium_20150105_03770A 33 TPRYHECLRNHAAALGGHVVDGCGEFMPG--XXXXXXXXXCAACGCHRSFHRKDD 85
                               579*************************8..5567999***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257749.0E-153584IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047709.3E-223584IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-223584IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.8513684IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.1E-13155223IPR009057Homeodomain-like
SuperFamilySSF466891.15E-7157223IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEFRGQEQDP VRDMGASSTP PPAASSSALP GETPRYHECL RNHAAALGGH VVDGCGEFMP  60
GXXXXXXXXX CAACGCHRSF HRKDDGHQRR QLMLPMPPAP PPPPVTPRVP LLLPPPPPHP  120
AYPHYAAFPS YHGTPSGSGG TTTESSSEER GPPSAQAPQG QQPARRKRFR TRFTPEQKEQ  180
MLXXXXXXXX XXXXXXXXXX XXXXAQVGVR RQVFKVWMHN NKHIXXXXXX XXXXXXXXXX  240
XXXX*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03770A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961117.14e-66zinc-finger homeodomain protein 6-like
SwissprotB8AX531e-62ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A368QET71e-64A0A368QET7_SETIT; Uncharacterized protein
STRINGPavir.Ca01004.1.p4e-64(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-16zinc finger homeodomain 1