PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_03789A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

HB-other

Protein Properties

Length: 194aa MW: 21986.6 Da PI: 6.8224

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_03789A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.2	2.5e-17	94	150	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+ t+++keq ++Le+ F++n++p++ + + LA+ l++t ++V+vWF NrR + k+ Oropetium_20150105_03789A 94 KREYTRLSKEQFDQLEASFQENPNPDKWATRALADTLKMTLKRVQVWFVNRRLRLKR 150 7899**************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.8E-18	78	151	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-17	85	152	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.342	91	151	IPR001356	Homeobox domain
SMART	SM00389	3.7E-14	93	155	IPR001356	Homeobox domain
CDD	cd00086	1.87E-14	94	152	No hit	No description
Pfam	PF00046	9.7E-15	94	150	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	126	149	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MAEYMGIPNS PSGLELTIAT PGSGNGVHIS SSSVPDGNKG SNAENVRELT LLDTFDREEV 60 EEDAQHISSS MEIEAAGDED NRPPVVDRSS SFQKREYTRL SKEQFDQLEA SFQENPNPDK 120 WATRALADTL KMTLKRVQVW FVNRRLRLKR ENTQESEKEL KRQVELLTNE TRHLRQKLKK 180 LKKKAYPVQT TVA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	150	RRLRLKRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_03789A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP40601	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	1e-11	homeobox-leucine zipper protein 3

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_03789A