PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03799A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 295aa    MW: 31044.8 Da    PI: 8.8806
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03799AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.3e-10223245527
                                --SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                                lCr++    +C+yGd+C+FaHg+
  Oropetium_20150105_03799A 223 LCRNWGLRKYCPYGDNCRFAHGK 245
                                8********************96 PP
2zf-CCCH34.73.1e-11263289127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                yk++lC+++ar G+Ck G +C FaHg+
  Oropetium_20150105_03799A 263 YKRRLCKYWARDGFCKNGINCWFAHGR 289
                                9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.633218246IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-5218245IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-7219246IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-8222246IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7223245IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-9261292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-11261292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.042262290IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6262289IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8263289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MLATNDVPDL DLAGSQVDAA APVVAASEMM LLAAPVEATH HHRGHLLAEA GRIAAQAHYP  60
TFIQSFFRST TATDEGSAAE LAAPYSLFYG YMLINPAIAK SAQFAPASQV LHQGCISNRT  120
GTASSSGSTF AGFDSGTPRP ALINGAAGSY TAAAFRTSNL NSNAPPYLPR FHDGTATTRL  180
ASWGATSNIP SVSLATLLSA SSSSDGAGFL SSTASGHECK GILCRNWGLR KYCPYGDNCR  240
FAHGKSKQIV DANSSRGMKA AAYKRRLCKY WARDGFCKNG INCWFAHGRS DLYN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03799A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.13e-06zinc finger protein 1