PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_03825A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NF-YB

Protein Properties

Length: 207aa MW: 22093.9 Da PI: 7.1805

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_03825A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	75.3	9e-24	15	62	2	49
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse 49 +eqdr+lPian+srim++++P n+k++kdake vqecvsefi+f+ts+ Oropetium_20150105_03825A 15 KEQDRYLPIANISRIMRRAVPDNGKMAKDAKEAVQECVSEFIGFITSD 62 89********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.6E-21	13	61	IPR009072	Histone-fold
SuperFamily	SSF47113	2.99E-18	17	85	IPR009072	Histone-fold
Pfam	PF00808	1.6E-14	20	63	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Pfam	PF05678	2.1E-9	135	161	IPR008889	VQ

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MSEGEYALEG GAGGKEQDRY LPIANISRIM RRAVPDNGKM AKDAKEAVQE CVSEFIGFIT 60 SDTLGFEEYV EPLKLYLKLY REGRRQCNCC CGSLDTCISG CKTHKSAFDL LIGFKPATGK 120 AMSRDDEAKP LTVKIIETVF VEADTADEFK SVVQRLTGKG GAAAQPEQGS RPPPQAAAHQ 180 RIGAGKEGGG SRGDREAGTS APKRDG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	2e-26	15	82	3	93	NF-YB
4awl_B	2e-26	15	82	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	2e-26	15	82	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_03825A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC104284	1e-35	AC104284.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1735_C10, complete sequence.
GenBank	AP014961	1e-35	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	1e-35	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B9FLQ6	1e-54	B9FLQ6_ORYSJ; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18750	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.7	4e-30	nuclear factor Y, subunit B1

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_03825A