PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03836A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 214aa    MW: 23828.5 Da    PI: 5.2428
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03836AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.41.1e-2668127258
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                 Dg++WrKYGqK++ g+++pr+Y+rCt++   +C ++k+v+r++ dp +++++Y+g H++
  Oropetium_20150105_03836A  68 GDGFSWRKYGQKDILGAKYPRAYFRCTHRttqSCVATKQVQRADADPLLFDVVYHGAHTC 127
                                5**************************998889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-2654128IPR003657WRKY domain
PROSITE profilePS5081121.14962125IPR003657WRKY domain
SuperFamilySSF1182904.84E-2463127IPR003657WRKY domain
SMARTSM007741.1E-3767129IPR003657WRKY domain
PfamPF031068.6E-2569127IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MENSLASHLE RVQSMVRELE ANMDQQEDLP LAAMEICGAL ASSIDRKGVP SVRTQVRVSA  60
EQDMSALGDG FSWRKYGQKD ILGAKYPRAY FRCTHRTTQS CVATKQVQRA DADPLLFDVV  120
YHGAHTCVQA AAHIATTTTE QHLQQPAGHT HAATHQEQTA GFEPMTPFPF ASTPAATELQ  180
QFRNSDAVLE LEHQLEQFFS NPSDYFQWDF QDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-1967127868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03836A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769264e-57AY676926.1 Oryza sativa (indica cultivar-group) transcription factor WRKY98 (WRKY98) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806380.11e-67probable WRKY transcription factor 30
TrEMBLA0A3L6DU442e-68A0A3L6DU44_MAIZE; Putative WRKY transcription factor 53
STRINGPavir.J01329.1.p4e-66(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.29e-34WRKY family protein