PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03854A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 112aa    MW: 12913.4 Da    PI: 8.931
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03854AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.4e-091461347
                               SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                               +W+++E +++ +a + +G +   +W++++  mg  ++++++  +++++
  Oropetium_20150105_03854A 14 AWSKQENKKFEQALAYYGEDtpnRWDKVSTAMGGSKSAEEVWYHYLDL 61
                               8********************************99*********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.771762IPR017877Myb-like domain
SMARTSM007179.7E-71164IPR001005SANT/Myb domain
SuperFamilySSF466899.72E-131370IPR009057Homeodomain-like
PfamPF002497.1E-81461IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MSGSRSSSPN SSSAWSKQEN KKFEQALAYY GEDTPNRWDK VSTAMGGSKS AEEVWYHYLD  60
LVDDVKKIES RQVPYPKYKE QGFWTYSVAN FPQGMPDNCV KDLKLRLWRF Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-18682277RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03854A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961187.16e-32protein RADIALIS-like 3
RefseqXP_015639473.15e-32protein RADIALIS-like 3
SwissprotF4JVB81e-18RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A1E5W9U01e-33A0A1E5W9U0_9POAL; Uncharacterized protein
STRINGOGLUM05G27750.12e-31(Oryza glumipatula)
STRINGOMERI03G29410.12e-31(Oryza meridionalis)
STRINGOMERI05G22130.12e-31(Oryza meridionalis)
STRINGORUFI05G28020.12e-31(Oryza rufipogon)
STRINGOS05T0567600-002e-31(Oryza sativa)
STRINGOPUNC05G23730.12e-31(Oryza punctata)
STRINGORGLA05G0226000.12e-31(Oryza glaberrima)
STRINGSi024486m2e-31(Setaria italica)
STRINGOBART05G26130.12e-31(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-19RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]