PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03905A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 352aa    MW: 38137.7 Da    PI: 10.729
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03905AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix476.6e-1537123186
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsesss 77 
                                +W++ e+ aL+ a  ++  +l+rg+l++++W+ev++++       ++r   r+ +qCk++ + l+k+yk++++++        s
  Oropetium_20150105_03905A  37 CWSDGETAALVSAWGSRYVELNRGNLRQKQWQEVADAVnsrrgasARRRPPRTDVQCKNRVDTLKKKYKAERARNAP------S 114
                                7*****************************************999999999************************97......4 PP

                   trihelix  78 tcpyfdqle 86 
                                 +++f++l+
  Oropetium_20150105_03905A 115 GWSFFHELD 123
                                7******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-2635125No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEVREMAXXX XXXXXXXGGG GGKLPPPNPN LPYREDCWSD GETAALVSAW GSRYVELNRG  60
NLRQKQWQEV ADAVNSRRGA SARRRPPRTD VQCKNRVDTL KKKYKAERAR NAPSGWSFFH  120
ELDRLVGPTL NASASKRPSP STVPQFAMPV HPPPIRKPPS PSLSPSPPPA VMGKPPPPMA  180
LPLPNNRRGY PLPAAALIQQ EAAAAAAAMS DSEDSDDAGA KNNYNTQQSP SRSVSSLSGN  240
SKKRSRPGTG SGDRGFRELA RAIEAFAEMY ERVENAKQKH ALEMERQRID FLKQLEVKRM  300
ENFVDAHVKL VRAKRVKKMA GAGGASDGAA AGVELVATVA ALPFVSSSSF H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03905A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0398061e-135BT039806.1 Zea mays full-length cDNA clone ZM_BFc0045P15 mRNA, complete cds.
GenBankBT0433871e-135BT043387.2 Zea mays full-length cDNA clone ZM_BFc0175K05 mRNA, complete cds.
GenBankEU9671221e-135EU967122.1 Zea mays clone 299578 6b-interacting protein 1 mRNA, complete cds.
GenBankHQ8586721e-135HQ858672.1 Zea mays clone UT1108 Trihelix transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440242.11e-144trihelix transcription factor ASIL2
TrEMBLA0A0A9IAS81e-152A0A0A9IAS8_ARUDO; Uncharacterized protein
STRINGSb09g028350.11e-143(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-29sequence-specific DNA binding transcription factors