PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03987A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 241aa    MW: 26388.1 Da    PI: 10.4428
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03987AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.71.5e-3048143186
                                EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                f+k+ tpsdv+k++rlv+pk++ae+h          +g+  +++ l +ed  g+ W+++++y+++s++yvltkGW++Fvk++gL
  Oropetium_20150105_03987A  48 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpaaaiSGECSKGVLLNFEDAAGKAWRFRYSYWNSSQSYVLTKGWSRFVKEKGL 131
                                89***************************99999997778899***************************************** PP

                                -TT-EEEEEE-S CS
                         B3  75 kegDfvvFkldg 86 
                                ++gD v F++++
  Oropetium_20150105_03987A 132 RAGDAVGFYRSS 143
                                ********9654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-3843169IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.72E-2946143IPR015300DNA-binding pseudobarrel domain
CDDcd100174.09E-2946142No hitNo description
PROSITE profilePS5086312.73148153IPR003340B3 DNA binding domain
PfamPF023627.6E-2748143IPR003340B3 DNA binding domain
SMARTSM010195.8E-2148150IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MLRKHTYLEE LAQNRPAFAA AVVSPSPPPK NPASDPPGTT SAAREHLFDK TVTPSDVGKL  60
NRLVIPKQHA EKHFPLQLPA AAISGECSKG VLLNFEDAAG KAWRFRYSYW NSSQSYVLTK  120
GWSRFVKEKG LRAGDAVGFY RSSSPAAGGN KQQQQLYIDC KVRPRTTTTT AFVNAATSSS  180
SPPAKKTVRL FGVDLLTKPA PTVQEEEILA VNKRTRDFIT SSSTTPHMFF KKQCIDFALT  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-524516311117DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03987A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419622e-99BT041962.2 Zea mays full-length cDNA clone ZM_BFb0089O18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807648.11e-107AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ6L4H47e-86Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A2T7EAR21e-108A0A2T7EAR2_9POAL; Uncharacterized protein
STRINGPavir.J13012.1.p1e-111(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-62related to ABI3/VP1 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]