PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_04043A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

MYB_related

Protein Properties

Length: 133aa MW: 14626.5 Da PI: 10.2599

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_04043A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42	2.1e-13	62	106	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ l++ + ++lG g+W+ I+r + ++Rt+ q+ s+ qk+ Oropetium_20150105_04043A 62 PWSEEEHRLFLVGLEKLGRGDWRGISRGFVTTRTPTQVASHAQKF 106 8******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.383	55	111	IPR017930	Myb domain
SuperFamily	SSF46689	2.32E-17	57	112	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-17	58	110	IPR006447	Myb domain, plants
SMART	SM00717	9.0E-10	59	109	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-10	59	102	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-10	62	105	IPR001005	SANT/Myb domain
CDD	cd00167	4.89E-10	62	107	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MEDCLTLQGS ASPPIYYALG APLFLSSMDK GGEMRANTEG GLSDDGGPGG PAAFRERKKG 60 VPWSEEEHRL FLVGLEKLGR GDWRGISRGF VTTRTPTQVA SHAQKFFLRQ NSAGKKNGKR 120 RERKNYSYYQ LV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_04043A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF184673	4e-68	KF184673.1 Saccharum hybrid cultivar R570 clone BAC 008G08 complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961036.3	1e-48	transcription factor SRM1
Swissprot	Q7XC57	4e-31	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A368QE50	3e-47	A0A368QE50_SETIT; Uncharacterized protein
TrEMBL	K3Z7V4	3e-47	K3Z7V4_SETIT; Uncharacterized protein
STRING	Pavir.J35324.1.p	3e-48	(Panicum virgatum)
STRING	Si022624m	4e-48	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4932	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	3e-31	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_04043A

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]