PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04152A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family E2F/DP
Protein Properties Length: 438aa    MW: 48260.4 Da    PI: 9.378
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04152AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP65.85.7e-2154120171
                    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealn.liekkekneirwkg 71 
                                rk+ksL+ll+++f++l+ + + + + l+e+a++L    v  +rRRiYDi+NVLe+++ ++ +k+kn+++w+g
  Oropetium_20150105_04152A  54 RKQKSLGLLCSNFVALYDRDNVEPIGLDEAARSL---GV--ERRRIYDIVNVLESVGkILVRKAKNRYTWIG 120
                                79*****************999************...**..***************7466778*******98 PP
2E2F_TDP77.41.4e-24194273170
                    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70 
                                rkeksL+lltq+f+kl+ + e ++v+l+e++k L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw 
  Oropetium_20150105_04152A 194 RKEKSLGLLTQNFVKLFLTMEVDTVSLDEASKLLLGEaheetNMRTKVRRLYDIANVLSSLNLIEKihqenTKKPAFRWL 273
                                79********************************************************************99*******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.8E-2450121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.7E-2554120IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.4E-1855120IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.09E-1356121IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.1E-22191274IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.6E-31194274IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.7E-19195273IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.93E-12196273IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAPAPAMAAA SSSVAQAAAA AAAAAAMESA FLSQQEPPLR EGGGPKSRHH TYSRKQKSLG  60
LLCSNFVALY DRDNVEPIGL DEAARSLGVE RRRIYDIVNV LESVGKILVR KAKNRYTWIG  120
FDGIPNALRE LKDRALREMS GSTLVKKEQQ SAANMSDDED DKLGDPDGDT DSEKLSQTAD  180
KPGAPQCRLR SDHRKEKSLG LLTQNFVKLF LTMEVDTVSL DEASKLLLGE AHEETNMRTK  240
VRRLYDIANV LSSLNLIEKI HQENTKKPAF RWLAKAGKPK TENGVTVALP PSVTTVTNKR  300
TFGTELTNID THRRNLDSTV QKKAKLAQSG SDILRSCKSS VQSHLRQGSR SSFVYGPFHP  360
ASARKQETDG ANKSVKRERA EDWESLSASF LPQYQNEALG DLFAHYCEAW KSWYSDLVQG  420
SNIMQQHLGQ SAVNQFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-37532683232Transcription factor E2F8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04152A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795108.10.0E2F transcription factor-like E2FE
TrEMBLA0A0A9F0P30.0A0A0A9F0P3_ARUDO; Uncharacterized protein
STRINGOB02G38920.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-104DP-E2F-like 1