PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_04190A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

Nin-like

Protein Properties

Length: 187aa MW: 21270.5 Da PI: 9.3392

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_04190A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.8	3.3e-26	62	111	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k ++e++s++Fs+pik+AA+eL+v++TvLK++CR + I+RWPhRk+ksl Oropetium_20150105_04190A 62 KLFTFEQVSRHFSMPIKQAARELNVGPTVLKKRCRDLDIPRWPHRKVKSL 111 5679********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.052	44	132	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-22	65	111	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MISGELDGLS EIDGDFSSVW PQMEDAYRKS MEGDKEVNME CGGVESGKKM QGLLRGSGAD 60 KKLFTFEQVS RHFSMPIKQA ARELNVGPTV LKKRCRDLDI PRWPHRKVKS LQTLINNVQE 120 LGKEDSHRTR AVVEMLQHTK RMMEKKPAAM LDENTKALRQ ACFKEKFKRR RLMAHAVECG 180 WDDSAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	171	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_04190A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822796.1	3e-59	protein RKD1
Swissprot	Q9M9U9	1e-31	RKD1_ARATH; Protein RKD1
TrEMBL	A0A3L6QLV7	3e-59	A0A3L6QLV7_PANMI; Protein RKD3-like
STRING	Pavir.Aa00708.1.p	1e-56	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	5e-34	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_04190A