PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_04250A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

MYB_related

Protein Properties

Length: 282aa MW: 30957.7 Da PI: 4.4157

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_04250A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.2e-17	14	66	1	48
TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l d+++++G g ++Ia+ ++ gRt++++k++w+++l Oropetium_20150105_04250A 14 KGPWTPEEDQKLMDYIQKHGHGswralpKLAAIAKQLP-GRTDNEIKNFWNTHL 66 79******************8888888889999999.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.9E-17	9	76	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.812	9	70	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.4E-25	12	67	IPR009057	Homeodomain-like
SMART	SM00717	5.6E-15	13	68	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-16	14	66	IPR001005	SANT/Myb domain
CDD	cd00167	9.48E-16	16	66	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MGRSPCCDEN GLKKGPWTPE EDQKLMDYIQ KHGHGSWRAL PKLAAIAKQL PGRTDNEIKN 60 FWNTHLKKKL IQMGFDPMTH RPRTDFFAAL PQLIALANLR QLVEQRPWDD HTAMLQAEAV 120 QATKLQYLQS LLQSAASIAT SPSSSSINTI PSDQEQICLL SPPQMSSLSS LPSPSFLESI 180 SAQDISAGQL PDIQMPSSFF ELPISDDANQ NTDYAANGSL EGDNSTPTKT LLMSENSLPP 240 LADFPISNLG DACSTSSCDD SNTQFPSWPE LFDQQFLNEF A*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_04250A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953959.1	1e-156	transcription factor MYB16
Swissprot	Q9S9Z2	8e-62	MYB93_ARATH; Transcription factor MYB93
TrEMBL	K3YU39	1e-155	K3YU39_SETIT; Uncharacterized protein
STRING	Si017785m	1e-156	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1126	37	132

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	3e-57	myb domain protein 93

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_04250A

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]