PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04290A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MIKC_MADS
Protein Properties Length: 194aa    MW: 21564 Da    PI: 5.7928
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04290AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.2e-27959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krie+   rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl  ++s
  Oropetium_20150105_04290A  9 KRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSQFAS 59
                               79*********************************************9986 PP
2K-box20.42.1e-08891424798
                      K-box  47 slkeLqqLeqqLekslkkiR..skKnellleqieelqkkekelqeenkaLrkkl 98 
                                ++    +L +qL +s  + R  ++K++ +leqi++lq+k  +l een++Lr+++
  Oropetium_20150105_04290A  89 EHSKYANLNEQLAESSIRLRvlQTKDQQFLEQINDLQRKSSRLAEENMQLRNQV 142
                                555567899999999888775589***************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.623161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-36160IPR002100Transcription factor, MADS-box
CDDcd002655.34E-39275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-30375IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-253859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-594142IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MARERREIKR IESAAARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS TGKLSQFASS  60
SMNEIIDKYN THSKNLGKTD QPSLDLNLEH SKYANLNEQL AESSIRLRVL QTKDQQFLEQ  120
INDLQRKSSR LAEENMQLRN QVFQIAPSTK EAVAETENVV AEDGQSSESV MTALHSGSSQ  180
DNDDGSDVSL KLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-20173173MEF2C
5f28_B2e-20173173MEF2C
5f28_C2e-20173173MEF2C
5f28_D2e-20173173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04290A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4306931e-118AJ430693.1 Zea mays mRNA for putative MADS-domain transcription factor (m26 gene).
GenBankBT0354201e-118BT035420.1 Zea mays full-length cDNA clone ZM_BFb0060F04 mRNA, complete cds.
GenBankEU9667831e-118EU966783.1 Zea mays clone 297374 MADS-box transcription factor 22 mRNA, complete cds.
GenBankKJ7269231e-118KJ726923.1 Zea mays clone pUT3468 MADS transcription factor (MADS73) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105154.21e-122m26 protein
SwissprotQ9XJ661e-110MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLA0A1D6HL271e-121A0A1D6HL27_MAIZE; MADS-box protein SVP
STRINGGRMZM2G046885_P011e-122(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.16e-50MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]