PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04385A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NF-YA
Protein Properties Length: 253aa    MW: 27251.6 Da    PI: 10.3194
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04385AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.81.5e-3298154158
                  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                dep+YVN+KQy++Il+RRq Rakle+++kl  k+rkpylheSRh hA++R+RgsgGrF
  Oropetium_20150105_04385A  98 DEPIYVNPKQYRGILRRRQLRAKLEAQNKL-VKARKPYLHESRHLHAMKRARGSGGRF 154
                                79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-3796157IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.11697157IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.9E-2899154IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-22100122IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-22131154IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MLLPASSSSS ASKGYPFKKT VDDHMSTILT FGNKQSLFVS QSIDYGQSIA CISYPYNDSG  60
SGGLWTAYGS HTSTVSHPQI TGGSIAGRVP LPLELAEDEP IYVNPKQYRG ILRRRQLRAK  120
LEAQNKLVKA RKPYLHESRH LHAMKRARGS GGRFLNTKQL QQQEQSATPY KDSTNFSGST  180
HLRLGGGGGG SAPAPKAMAS QENSKKACSS APDLFQFPGQ HLSFSDYFGQ SSAQNGVAVL  240
HNGAQQMVSV MR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-2098159263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04385A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824571.11e-112nuclear transcription factor Y subunit A-8-like isoform X1
SwissprotQ93ZH25e-40NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A3L6RW301e-112A0A3L6RW30_PANMI; Nuclear transcription factor Y subunit A-8-like
STRINGPavir.Aa00318.1.p1e-112(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132762833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.16e-42nuclear factor Y, subunit A3