PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04506A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ARR-B
Protein Properties Length: 737aa    MW: 79203.4 Da    PI: 7.6589
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04506AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like59.76e-19210253145
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                                kpr++W+ +LH++Fv av++L G++kA+Pk+ilelm+v+ Lt+e+
  Oropetium_20150105_04506A 210 KPRVVWSVDLHRKFVAAVNHL-GIDKAVPKRILELMNVEKLTREN 253
                                79*******************.********************987 PP
2Response_reg77.45.2e-26241321109
                                EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
               Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82 
                                +l vdD+p+ +++l+++l++ +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+    e ++lp+i+++ +ge
  Oropetium_20150105_04506A  24 ILAVDDDPVCLKVLETLLRRCQY-HVTTTNQAAIALNMLRENRemFDLVISDVHMPDMDGFKLLELVGPE-MDLPVIMLSVNGE 105
                                799********************.***************99999********************999654.48*********** PP

                                HHHHHHHHHTTESEEEESS--HHHHHH CS
               Response_reg  83 eedalealkaGakdflsKpfdpeelvk 109
                                 +++ + +  Ga d+l Kp+ +e+l++
  Oropetium_20150105_04506A 106 TKTVMKGITHGACDYLLKPVRIEALRN 132
                                ************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.8E-1691643IPR017053Response regulator B-type, plant
SuperFamilySSF521721.14E-3421146IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.1E-4121159No hitNo description
SMARTSM004487.9E-3122134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.67323138IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.3E-2324132IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.63E-2525138No hitNo description
Gene3DG3DSA:1.10.10.604.0E-19208261IPR009057Homeodomain-like
SuperFamilySSF466893.94E-11208261IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-16210253IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MRPDERSSAV GRRVRDQFPV GMRILAVDDD PVCLKVLETL LRRCQYHVTT TNQAAIALNM  60
LRENREMFDL VISDVHMPDM DGFKLLELVG PEMDLPVIML SVNGETKTVM KGITHGACDY  120
LLKPVRIEAL RNIWQHVIRR KFSNRDRLNF DTYEECNKTL TVDHSQITCG SPDQSGRPSK  180
KRKEYHSEED DDEGDEGNGP ENDDPSAPKK PRVVWSVDLH RKFVAAVNHL GIDKAVPKRI  240
LELMNVEKLT RENKYRLYLK RLSAVASQQA TIAAALGGTD PFMRMGTFEG LQGYQTFTSP  300
AATALSSFSA QGLLSSSNPT SFGVQGIAAS RSIQIPNGNS TISHSICDAK YHPSLPGNQQ  360
GNLAHGLTTS VGQVQLPQKW INEETEDLSN IISGSGVANG APGTFQSVTN SPLLQQELVK  420
AKVVIQPLIK TRGIPEHPGG AVGVSSSLMD SRVSQQNCLP LSAFSTSGLP TNGSFGNNIC  480
NMGAASSGVT LICSNDLRVA RDNKVGASSF CSSSVPLPPG GDQNSKYLTF GNVSSLRQTT  540
DADNLLGSKQ VWSSLPSSQL LSNIGAQQAG ASTSTAASQT KIDMFISGDI PTPKNASDFS  600
IPRLQSELSS SSCSFDGLLN SIIKMEKDDA SFSDDLGLLF FILEAAKRKS GELGLVGAVG  660
SRQAASQVGA RRRRRRSGEG QGTADLGGVR IDDSRGCLPA AGSAESRGLA TPLTDHTNFP  720
LQIVTGHPQC KCLLSW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-19206263164ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1670675RRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04506A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954220.10.0two-component response regulator ORR23
SwissprotQ6K8X60.0ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A0A9P9A60.0A0A0A9P9A6_ARUDO; Two-component response regulator
STRINGSi016546m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.16e-92response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]