PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04560A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 688aa    MW: 74651.1 Da    PI: 5.9365
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04560AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.7e-16534580455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 hn  E+rRR+riN+++  L++l+P++      K +Ka++L  A+eY+k+Lq
  Oropetium_20150105_04560A 534 VHNLSEKRRRSRINEKMKALQTLIPNS-----SKTDKASMLDDAIEYLKQLQ 580
                                6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-19527595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-19528595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981530579IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.20E-16533584No hitNo description
PfamPF000101.2E-13534580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-19536585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MQLLLATLEA LKIAYPKFLS GVSGHHASSV QQVVENQSLH EIGERVIEML DQVTPNAKER  60
FSAMESSGVA NAAEGAAWSE DLPERATLPP VLCRPRSPPL HEHVQDLPSD VAESNFARKD  120
GQEACGCEPP STPSDDCLLQ TTPPSVSAHP LSAPPPSPVP TTGWPMLLQQ WEEVKEDGNA  180
VAATSLVPPS AESHQAASTA NQDSENDDEG ASSLSAAEAG QPSSASSMDS HEQPPVQDVK  240
LPVQNQNAPP PKLGQEPSPS SPIVPAKAPP PPPPGNIAAV LRAKRAASKL KRSAQMGSLY  300
RHLRDRVEGS GSHGGKKPQG KKVKAPAGTK GEAGQGMADA LAEMTKRSAY FRQIAEDAEN  360
HVTTILELKD AIGSFQSKDM AEIVKFHQHV EQQLGCLTDE TQVLARFEGF PSKKLESLRM  420
AAALYSKLDA VVSTLKGWKL AAPVAQQLDK VEGYFNKIKD DVDMIERNKD DETKRFQSHG  480
IHFDFGLLVR IKECMVDLSS NCMELVLKDA LGSSESEPAR PARPRGKRSR AAEVHNLSEK  540
RRRSRINEKM KALQTLIPNS SKTDKASMLD DAIEYLKQLQ LQVQTIFQQD MMLKQNRVIS  600
DQETPSATGH KVKSVGQETS IVDAENYDRI SLRNEHSQDM VPKNTDCVLF MPYLHCLQSS  660
DAEADLRAGS SSEYLLLATA NSTDACC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04560A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0333821e-96BT033382.1 Zea mays full-length cDNA clone ZM_BFb0041N16 mRNA, complete cds.
GenBankBT0640561e-96BT064056.1 Zea mays full-length cDNA clone ZM_BFc0135E23 mRNA, complete cds.
GenBankEU9671571e-96EU967157.1 Zea mays clone 299878 hypothetical protein mRNA, complete cds.
GenBankKJ7269881e-96KJ726988.1 Zea mays clone pUT3689 bHLH transcription factor (bHLH168) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804927.10.0uncharacterized protein At4g04980-like
TrEMBLA0A2S3GUQ10.0A0A2S3GUQ1_9POAL; Uncharacterized protein
STRINGPavir.Ab03240.1.p1e-167(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-21bHLH family protein