PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04613A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 410aa    MW: 45556.3 Da    PI: 7.522
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04613AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like993.4e-31238291255
                    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                 r+rWtpeLHe+Fv av+ LGGsekAtPk+i ++mk+k Lt++hvkSHLQkYR 
  Oropetium_20150105_04613A 238 LRMRWTPELHEQFVAAVKMLGGSEKATPKAIQKVMKIKRLTIYHVKSHLQKYRA 291
                                69***************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.508234294IPR017930Myb domain
SuperFamilySSF466892.51E-16235292IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27237291IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-23237291IPR006447Myb domain, plants
PfamPF002495.6E-10239290IPR001005SANT/Myb domain
PfamPF143795.8E-14326368IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MNQLHGGRVP TCRSSVATIV PELSEGIFPS FPVHRPCLVE RELPSSSITS FDALTCTLPF  60
NFTSSDLHTY NETPSPNGKL SSGSYATEQF DTYSLLPSTY PEFTSDSSSI GTILPQVSEQ  120
INWNQESTQG VFGCPPSISF SNQQNVNHVG KQTQHSIRMN PEAHLGKKNR QLSSGGSLQF  180
LGSAEPVLQL IDFIAVDARS LTPQNYSYCR EQSNLPPSNY DVVSTENLPS LNTTPIKLRM  240
RWTPELHEQF VAAVKMLGGS EKATPKAIQK VMKIKRLTIY HVKSHLQKYR AVQYQPETPD  300
AGAPSKRGTV TDEAPLSQFK GLDNVEGLRT QIALQKQLYK QLEIQRKLQL QVEEHSKYLE  360
MIIVNQSESL KKLGALPGCQ DRSQPVLGDN RACEERTICT NSNTEEQRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-23237295260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-23237295260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-23237295260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-23237295260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-23237295260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-23237295260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-23237295260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-23237295260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04613A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315087.11e-122protein PHOSPHATE STARVATION RESPONSE 2 isoform X1
RefseqXP_021315088.11e-123protein PHOSPHATE STARVATION RESPONSE 2 isoform X3
TrEMBLA0A0A9MIF31e-177A0A0A9MIF3_ARUDO; Uncharacterized protein
STRINGPavir.Aa00126.1.p1e-117(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54942526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.11e-44phosphate starvation response 1