PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_04684A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

C2H2

Protein Properties

Length: 206aa MW: 22692.5 Da PI: 5.3792

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_04684A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	53	75	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C + F++ L H+++H Oropetium_20150105_04684A 53 YSCAFCRRGFPTAQALGGHMNVH 75 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.24E-6	50	79	No hit	No description
PROSITE profile	PS50157	10.429	53	80	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	55	75	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MEESAARSRE RKTKQQDEGA ACTPAARAHD EADDGKDYEQ EEVEDEAGTR EPYSCAFCRR 60 GFPTAQALGG HMNVHRRHRS AAAAQAGRRS SGCDYDYEQQ QYSLIVSTTD MTTSTGGGES 120 LSLFHHHAAA DQHRRVVAAP EERKKELLRL FRGGDHHCGK GADEDLLVQE EEQDRRRQHS 180 LKDQGKEGEE ELDLELRLGG GAAGS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_04684A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14547	22	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	4e-09	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_04684A