PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_04730A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

TCP

Protein Properties

Length: 232aa MW: 23936.6 Da PI: 10.2624

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_04730A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.6	1.3e-39	28	117	2	102
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssas 83 a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s +ss+s Oropetium_20150105_04730A 28 AVRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSSSS 111 789*************************************************************99999777443333333333 PP TCP 84 nsssgkaaksaakskksqk 102 + +++ + Oropetium_20150105_04730A 112 SAHAQ-------------H 117 11111.............1 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.2E-34	34	119	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	34	88	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MTTRPDGGDK QQQQLVPSSA NATSNGGAVR KAPSKDRHSK VDGRGRRIRM PIICAARVFQ 60 LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST SSPSSLRSSS SSAHAQHQHS 120 SVSVLPHAAP FILGKRVRGA DDDDNEVTAA AVGPAQGFWA LPARADFGQL WSFAAAPDMM 180 VAAAVPGEAS AARVGNYLPV AQGNLNLLAS FSGGPAGNGT TAARAEEESA R*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_04730A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240798	1e-105	AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBank	AP004776	1e-105	AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBank	AP014958	1e-105	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-105	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185649.1	2e-96	transcription factor TCP21-like
Swissprot	Q9FMX2	6e-78	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A453Q6Q9	2e-94	A0A453Q6Q9_AEGTS; Uncharacterized protein
STRING	OMERI02G35320.1	5e-92	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	9e-49	TCP family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_04730A