PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04766A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 221aa    MW: 24691.7 Da    PI: 10.0554
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04766AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.6e-1456103355
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                ++h + ErrRR+++N++f  Lr+l+P       +K++ a+iL  ++eY+k+L+
  Oropetium_20150105_04766A  56 ASHVIKERRRREKLNERFVVLRSLVPFV-----TKMDRASILGDTIEYLKQLR 103
                                5899***********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.73653102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1156102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-1856121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1757115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.51E-1357107No hitNo description
SMARTSM003531.6E-1559108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
SSSSRLFSNA SRYCREVVES PDEPSSCRDG GGEGTTSRGA RRGQTNQTQT PAEVSASHVI  60
KERRRREKLN ERFVVLRSLV PFVTKMDRAS ILGDTIEYLK QLRRRIQDLE SSRSSRHHHQ  120
MIVDGGNNKT TTTSSSTGML PAGTEVQVSI IESDALLELR CPHRDGLLLR LMHAMHRDLR  180
LEVTSVQASS TGGVLLAELR AKASTTTREK RDPWEEEQHR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-1457113864Transcription factor MYC2
5gnj_B5e-1457113864Transcription factor MYC2
5gnj_E5e-1457113864Transcription factor MYC2
5gnj_F5e-1457113864Transcription factor MYC2
5gnj_G5e-1457113864Transcription factor MYC2
5gnj_I5e-1457113864Transcription factor MYC2
5gnj_M5e-1457113864Transcription factor MYC2
5gnj_N5e-1457113864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16166ERRRRE
26267RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04766A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679989.12e-65transcription factor TT8
SwissprotE3SXU48e-46BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A368PW856e-64A0A368PW85_SETIT; Uncharacterized protein
TrEMBLK3ZR764e-64K3ZR76_SETIT; Uncharacterized protein
STRINGSi029106m7e-65(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.15e-31bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]