PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04876A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 201aa    MW: 20998.5 Da    PI: 8.6213
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04876AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00024567123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C+ Cg++F++   L  H  +H
  Oropetium_20150105_04876A 45 FECKTCGRRFPTFQALGGHRASH 67
                               89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.8E-943119No hitNo description
SMARTSM003550.114567IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-124569IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7854567IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
PfamPF139121.1E-896121IPR007087Zinc finger, C2H2
PROSITE profilePS501578.74697124IPR007087Zinc finger, C2H2
SMARTSM003551.197119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAISGVSSSG SDYCSMPTME NEPGVATVRI XXXXXXXXXX GGRLFECKTC GRRFPTFQAL  60
GGHRASHRRP AGPYYSLGNR KLVAAQEGAC APGPRVHGCP ICGVEFAVGQ ALGGHMRRHQ  120
AAAANARVQV SRAVTPEACS FGAAASAKDD DNAGNCVGGI CLELNMTPSA SCVKCQKNAR  180
RAENVDTRLH PLTGCCITMV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04876A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805950.11e-42zinc finger protein ZAT12-like
TrEMBLA0A1E5USH42e-44A0A1E5USH4_9POAL; Uncharacterized protein
STRINGPavir.J32634.1.p2e-39(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.14e-26C2H2 family protein