PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05090A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 256aa    MW: 26395.7 Da    PI: 7.7122
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05090AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.54e-253681955
                    G2-like  9 eLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                                LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Oropetium_20150105_05090A 36 ALHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 81
                               59***********.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.91E-143785IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-243786IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-193781IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MREEEEPSWF ARCEEQLPRP DELMPLSQTL ITPDLALHKR FVDAVAHLGI KNAVPKTIMQ  60
LMSVDGLTRE NVASHLQKYR LYLKRMQGMG GAGGGGAGGG GGAGGSHSSG SGTDAATEHL  120
FATGPVPFLP PGHGHRAPAA ADPYPPFAPM GAAAHHHHHH HPPQIGHFHH PARPLGHYGS  180
AGAGFDHGFL SRAVAGGAPP VGPPGMHHRM VGGAAGMGMV SPSSFGDDLD LGSRGRGGGG  240
GGRRELTLFP TSGDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-2537841057Transcription factor LUX
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05090A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001310197.13e-91uncharacterized protein LOC107548110
TrEMBLA0A0E0HEF21e-101A0A0E0HEF2_ORYNI; Uncharacterized protein
STRINGONIVA05G17050.11e-102(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.12e-30G2-like family protein