PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_05226A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

SRS

Protein Properties

Length: 287aa MW: 29477.4 Da PI: 9.1707

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_05226A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	193.5	7.4e-60	74	241	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrer.qqqlaaasskaaasa..aeaaskrkrelkskkqs 84 gt+sC dCGnqakk+Cah+RCRtCC+srgf+C thvkstWvpaa+rrer qqqla a ++ ++ + + +++++ Oropetium_20150105_05226A 74 GTTSCYDCGNQAKKGCAHSRCRTCCNSRGFECDTHVKSTWVPAARRRERhQQQLAGAGASPPPPYlaKKPRLACQTNNNNTGGG 157 789********************************************55566655554444333222222333333456677 PP DUF702 85 alsstklssaeskkeletss..............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + s+t++s+a++++++etss lP++v+ +avfrcv+++svddg+ e+aYq+av+i+Gh+f+G+Lyd G+e+ Oropetium_20150105_05226A 158 TNSRTSTSNATTPRSFETSSshhhnhqdasfresLPRHVRGPAVFRCVQMTSVDDGHREVAYQAAVTINGHLFRGLLYDLGAED 241 8888999999999999999889999999***************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.5E-52	75	240	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.9E-25	77	119	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.0E-21	192	238	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MFPLVAAAHR ALETTTNANA NAKPASAPGP TIHFWQQAAA DGASPPSPSP GKKPRGGGGG 60 GGRADSGGSG SIGGTTSCYD CGNQAKKGCA HSRCRTCCNS RGFECDTHVK STWVPAARRR 120 ERHQQQLAGA GASPPPPYLA KKPRLACQTN NNNTGGGTNS RTSTSNATTP RSFETSSSHH 180 HNHQDASFRE SLPRHVRGPA VFRCVQMTSV DDGHREVAYQ AAVTINGHLF RGLLYDLGAE 240 DEGRAAHLGS SDLHLGSASA AAAPDLYNSG GGGPLILGGL GYGNTS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	62	RGGGGGGGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_05226A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039092	2e-47	BT039092.1 Zea mays full-length cDNA clone ZM_BFb0370H22 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004962238.1	1e-96	protein LATERAL ROOT PRIMORDIUM 1
Refseq	XP_022680709.1	1e-96	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	1e-46	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	K3Z8B1	3e-95	K3Z8B1_SETIT; Uncharacterized protein
STRING	Pavir.Cb01442.1.p	2e-97	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-45	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_05226A

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]