PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05283A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 160aa    MW: 18527.4 Da    PI: 8.9877
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05283AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS929.7e-294152224374
                       GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307
                                 +++L+++++l+Pk++v++e+eadhn + + +r+++a++yy++lf  +e+ +           + +++++++++v+ eg  rre
  Oropetium_20150105_05283A   4 AHALLHVLRDLKPKLLVLTEHEADHNCAVLSDRVVNAFDYYAVLFRDFEEVA-------EIDPKPVFKEQVMDIVTYEGLLRRE 80 
                                4689*****************************************9998882.......33345679999************** PP

                       GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg....yrve.eesgslvlgWkdrpLvsvSaWr 374
                                rhe++++W  r+++aGF+p+++s +a k+ k + ++++ +     +  +  ++g l+l+ ++ p++svSaWr
  Oropetium_20150105_05283A  81 RHEKMARWVPRMQQAGFEPAKVSADAFKETKKMTQQFSAHAklwsFDAHkVKDGYLLLYSRKVPIFSVSAWR 152
                                *************************************94432333333334588899999999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.6091127IPR005202Transcription factor GRAS
PfamPF035143.3E-264152IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MTQAHALLHV LRDLKPKLLV LTEHEADHNC AVLSDRVVNA FDYYAVLFRD FEEVAEIDPK  60
PVFKEQVMDI VTYEGLLRRE RHEKMARWVP RMQQAGFEPA KVSADAFKET KKMTQQFSAH  120
AKLWSFDAHK VKDGYLLLYS RKVPIFSVSA WRPVQNTPQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05283A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020395710.23e-39scarecrow-like protein 3
TrEMBLA0A1D6M1N26e-38A0A1D6M1N2_MAIZE; Scarecrow-like protein 3
TrEMBLK7UJ497e-38K7UJ49_MAIZE; GRAS transcription factor (Fragment)
STRINGGRMZM5G889326_P011e-38(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137161330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.14e-23RGA-like protein 3