PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_05284A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

GRAS

Protein Properties

Length: 152aa MW: 16214.5 Da PI: 7.0593

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_05284A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	35.9	1.1e-11	87	149	281	343
GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343 +r+ Er+ l+ e+++vv+ eg rrerhe+ W r++ aGF+p+p+s ++ ++a +l ++ Oropetium_20150105_05284A 87 DRAAAERVHLRGEVMDVVTGEGMLRRERHERWVCWALRMHVAGFEPAPMSGSVFNKAVSLAQQ 149 68899***************************************************9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	10.202	1	151	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.7E-9	87	149	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MTSEESSNKG KTAVVIKEEP SPVDAECPQV KKVKKSPPSG APIEQPVAEG ATAPAVATAP 60 AVASPAHIVI FGPQQQHAEG DPGRFVDRAA AERVHLRGEV MDVVTGEGML RRERHERWVC 120 WALRMHVAGF EPAPMSGSVF NKAVSLAQQM W*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_05284A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	2e-08	SCARECROW-like 1

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_05284A