PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05505A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family SBP
Protein Properties Length: 379aa    MW: 39591.7 Da    PI: 8.6534
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05505AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1322e-4166141176
                                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                                +CqvegC +dls +k+y+ rhkvC++hskap v+v+g+eqrfCqqCsrf +lsefD++krsCrrrLa+hnerrrk+
  Oropetium_20150105_05505A  66 RCQVEGCGVDLSGVKTYYCRHKVCKMHSKAPRVVVAGIEQRFCQQCSRFQQLSEFDQGKRSCRRRLAGHNERRRKP 141
                                6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.2E-3461128IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.74464141IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-3965144IPR004333Transcription factor, SBP-box
PfamPF031106.6E-3367140IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0042127Biological Processregulation of cell proliferation
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
METGGSGGDD VHGLKFGKKI YFEQDAAAGG SGSAAPAAGG SRRGKDAAAG GSTTSGGAGA  60
AATPPRCQVE GCGVDLSGVK TYYCRHKVCK MHSKAPRVVV AGIEQRFCQQ CSRFQQLSEF  120
DQGKRSCRRR LAGHNERRRK PPPGPLTPRY GRIAASLQEP GRYRSFLLDF SRDSWPPIQP  180
GDRIPTAVQW QGRPELHPHR SAVAGYGDPA YIGQGSSVAG AAMPHAFELP PGGCVAGVAT  240
DSSCALSLLS TQPWDTTQSG SHHHHRSPAP AMSTSASAFE GAPVSPSVMA SSYAAASSWS  300
GGSRVHEGSS SRSMHHHHSP QEDDLHLVHP GSVHHGHFSG ELELALQGSG PPNRPPHVDH  360
GSSAGSFDHS SNAANWSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-28671401184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00412DAPTransfer from AT3G57920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05505A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417772e-81BT041777.2 Zea mays full-length cDNA clone ZM_BFb0053F21 mRNA, complete cds.
GenBankHQ8586792e-81HQ858679.1 Zea mays clone UT1135 SBP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462571.11e-162squamosa promoter-binding-like protein 17
RefseqXP_025802689.11e-163squamosa promoter-binding-like protein 17
SwissprotA3C0571e-145SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A1E5W3U71e-176A0A1E5W3U7_9POAL; Squamosa promoter-binding-like protein 17
STRINGPavir.Ba01711.1.p1e-166(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.17e-33squamosa promoter binding protein-like 9