PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05516A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 390aa    MW: 41250.9 Da    PI: 8.0378
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05516AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.25.9e-13316361655
                                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +++Er RR ri +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  Oropetium_20150105_05516A 316 SIAERVRRTRISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKDLQ 361
                                689*********************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.199310360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-16313370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.66E-13314365No hitNo description
Gene3DG3DSA:4.10.280.104.3E-15315371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-13316366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-10316361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MYGSTVSTKD LNLPAVQSQM SSPGLLRYRS APSNLLGEVC AEGGAAGHHA ADAALARFLA  60
GHDAEIGDCK PPRAAHFLDD DASQHQQQQQ LMYQSQQQQK VAAMEGFYRT VSSGGTEEHA  120
AAGSGNCLLR QSSSPAGFLN RLNMDNGYGN MLRAGMASGG FMNGGGENAR LKGQLSYSSR  180
QGSVMSQISE MGSEELGGGS SPEAGSNGAA AARTYSGIVP AAAGAGYHGW DDASQAPPPD  240
QSHPVPGVKR PLDPAASHAP SVPNGHHLAP QLSLPSGGSN GKTSVDMAAI EKFLQFQDAV  300
PCKIRAKRGC ATHPRSIAER VRRTRISERI RKLQELVPNM EKQTNTADML DLAVDYIKDL  360
QNQVKELNDN RANCTCASNK RRPQHQFTC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05516A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9768151e-107EU976815.1 Zea mays clone 990854 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957179.11e-155transcription factor bHLH130 isoform X2
TrEMBLA0A0A9VBR81e-166A0A0A9VBR8_ARUDO; Uncharacterized protein
STRINGPavir.J00377.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-43bHLH family protein