PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05690A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 248aa    MW: 26738.4 Da    PI: 6.5124
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05690AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.71e-08165205954
                                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 r RR+ri +++ +L++l+P       +K++ a++L +A++Y+k L
  Oropetium_20150105_05690A 165 ARLRRERISERIRTLQRLVPGG-----TKMDTASMLDEAIHYVKFL 205
                                699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.675156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-15157227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14160218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-13162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-6166205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.33E-6178210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEFDLLNSSP EAQLELMKTM LQLEQLTALD QSLMMTPSMS PPVSPMQTPT AAQSHCGFSP  60
PPYMSTSTIS GTGGTPDGHQ YFAPAAYPAI LTGGGAEQHL QVEDYALSPD ALLGPSSPSS  120
SAADAMREAM FHIAALQPVE IDPESVRPPK RRNVRISKDP QSVAARLRRE RISERIRTLQ  180
RLVPGGTKMD TASMLDEAIH YVKFLKSQVQ NLERAAAATT HRAAALGAAY PAFHTPWQYA  240
LPHAGDM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151RPPKRR
2165170RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05690A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9561561e-131EU956156.1 Zea mays clone 1558251 DNA binding protein mRNA, complete cds.
GenBankKJ7269741e-131KJ726974.1 Zea mays clone pUT3675 bHLH transcription factor (bHLH150) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957004.14e-85transcription factor bHLH69
TrEMBLA0A3L6T9V09e-86A0A3L6T9V0_PANMI; Transcription factor bHLH69-like
STRINGSi030966m2e-84(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.16e-39bHLH family protein