PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05910A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 593aa    MW: 65344.9 Da    PI: 7.0711
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05910AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34.2e-06329353226
                                -S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                 +  C +f+  G C +G+ CkFaH+
  Oropetium_20150105_05910A 329 SRNVCFDFLNKGKCERGPECKFAHS 353
                                56678889999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073803.37E-3413221No hitNo description
SMARTSM003567.1E-4296322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-6299323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5299326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.648300323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-6327355IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-4327354IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868328355IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5331354IPR000571Zinc finger, CCCH-type
PfamPF046773.6E-37367484IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541979.07E-9374476IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.104.4E-7376485IPR011146HIT-like domain
PfamPF046765.8E-15510588IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MAAATPPAPP RILLAGDAHG RLHQLFKRVK SVNQSTGPFH ALLCVGQFFS PDGDAEGDVA  60
DYIEGRAAVP VPTYFTGDYG PAAPRLLSKA AAAARGFSPG GIEICPNLFW LRGSNRFTLH  120
GLSVVYLSGR KGPGGPGCYT QDDVDALRAL AEETVTNGAD TSNVPSQILD PDGYDPVVAE  180
LVAEIKPRYH IAGTKGVFYS RDPYINDTAA HVTRFIGLAN VGNKEKQKFI HAISPTPAST  240
MSSADLHARP PNATLSPYVA SINSIPTEDA TKRPAENNDA QYWRYDVKRQ KQGEAEWGRL  300
CFKFTSSGSC PRGNKCNYRH DEEAMEHYSR NVCFDFLNKG KCERGPECKF AHSLSGEDAT  360
ARDARPRSER RRVESRCWFC LSSPDVESHL VISIGESYYC ALAKGPLVPD HVLMIPVEHC  420
PNTLMMPPEA EAELGRYKSA LNKYFEKQGK VAVYFEWVSQ QSRHANLQVV PVPSSKADAV  480
KKIFHLAAKR LGFEFSVVNP DGEAIEGRES LKTQCEGKSS LFYVELPEGR ILLHKINSTE  540
KFPAQFGREV LAGLLSMADR ADWRNCKLSK EEEIQMVDDF KRGFCEFDPV EC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05910A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307898.10.0zinc finger CCCH domain-containing protein 59
SwissprotQ69NK80.0C3H59_ORYSJ; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A1E5V4N00.0A0A1E5V4N0_9POAL; Zinc finger CCCH domain-containing protein 59
STRINGGRMZM2G306935_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10173912
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]