PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06037A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 154aa    MW: 16957.7 Da    PI: 7.3634
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06037AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.5e-063456123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C++C++ F+++  L  H+++H
  Oropetium_20150105_06037A 34 YSCGYCKREFRSPQGLGGHMNVH 56
                               99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.23E-63260No hitNo description
PROSITE profilePS5015710.5753461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MERDHGHNID QGFISLAGHS WPPPQTRSSS STSYSCGYCK REFRSPQGLG GHMNVHRWDR  60
ARLIHGQHRR LIPPSPPNNG RVIDLSHGTA DDDGSPAAVT NKPDVVCHFT DSASSSTVAR  120
DFMVMKNFES LSSGVCSQHH DGKEDRLDLE LRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06037A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956784.12e-32transcriptional regulator SUPERMAN
TrEMBLA0A368Q1F45e-31A0A368Q1F4_SETIT; Uncharacterized protein
STRINGSi032740m3e-26(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2224367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-13C2H2 family protein