PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06082A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 465aa    MW: 46960.5 Da    PI: 6.3925
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06082AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.5e-12258303555
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Oropetium_20150105_06082A 258 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 303
                                99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.80E-13251306No hitNo description
SuperFamilySSF474596.94E-16251310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15255310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9258303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-13259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MQPTAQEMQA MAAAGKISLD DLRAAVSAGG VHDDFLDQML GGLPPSAWPD LSSAAAVGKA  60
PEQQPEGGMQ QFGGLYDESA LLASRLRQHQ ISGGAGAGAD AEAAAAKQMV MQQLADLRQQ  120
GHGHHMMFQG MDRSTAAGGG GGDGGMLLPL SLGSVGSSAD VQALLKAAAN SAGGEAGGLF  180
GGSFTGSLQQ HQQQQQHFQP HTQQQQTEAM PTQGFGGGAG GGGGGGASQQ QAGAAGGGAP  240
APPRQRVRAR RGQATDPHSI AERLRRERIA ERMKALQELV PNANKTDKAS MLDEIIDYVK  300
FLQLQVLSMS RLGGAAAVAP LVADMSSEGR GGGGAAPPAG SDGLAVTEQQ VAKLMEEDMG  360
TAMQYLQGKG LCLMPISLAS AISSATCHMR PPVGAAAGLA AHHMAAAMRF NAGAADDTAS  420
PSMSVLTAQS AMANGPSAGA DGEASHSQQH QQRQLKDAAS VSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262267RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06082A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799597.11e-174glycine, alanine and asparagine-rich protein-like
TrEMBLA0A2T7ESB11e-179A0A2T7ESB1_9POAL; Uncharacterized protein
STRINGGRMZM2G350165_P021e-168(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-45LJRHL1-like 1