PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06175A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 178aa    MW: 19009.1 Da    PI: 9.2266
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06175AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.75.1e-133983347
                               XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47
                               e +r rrk++NRe+ArrsR+RK++ ++ L   +++L+  Nk+L  
  Oropetium_20150105_06175A 39 ENRRKRRKESNRESARRSRLRKQQHLDDLNAQADQLKDHNKQLGA 83
                               5689*************************************9974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.4E-103484No hitNo description
SMARTSM003388.9E-1237101IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.5073981IPR004827Basic-leucine zipper domain
PfamPF001703.2E-103982IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.34E-104190No hitNo description
CDDcd147022.32E-164290No hitNo description
PROSITE patternPS0003604459IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MSMSGTSSGG GSAASSLGGT SRSSEDDVMN NLHLQAQMEN RRKRRKESNR ESARRSRLRK  60
QQHLDDLNAQ ADQLKDHNKQ LGAALRVTAQ SLVAVQAQNS VLQTQKMELE SRLGSLTEIL  120
LYLNAGTATT TSAVNSNSTV MNHHASIATA SSGACDVLAL GAASTWTQPV DLYYPCF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14146RKRRKE
25359RRSRLRK
35360RRSRLRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06175A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577967.17e-50bZIP transcription factor 44
TrEMBLA0A0A9GYA32e-60A0A0A9GYA3_ARUDO; Uncharacterized protein
STRINGPavir.Ba02250.1.p1e-54(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37403276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18160.16e-12basic leucine-zipper 2