PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_06184A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

G2-like

Protein Properties

Length: 257aa MW: 27808.6 Da PI: 8.7068

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_06184A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	67	3.2e-21	38	92	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHe ekAtPktil++m+vkgLtl h+kSHLQkYRl Oropetium_20150105_06184A 38 KPRLRWTADLHEXXXXXXXXXXXXEKATPKTILRTMGVKGLTLFHLKSHLQKYRL 92 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-21	35	93	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-14	38	93	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.51E-10	38	94	IPR009057	Homeodomain-like
Pfam	PF14379	1.9E-20	133	178	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MFPPGLIHHR PDGPAPGDAP PRSGAGGGPS LVLTADPKPR LRWTADLHEX XXXXXXXXXX 60 XEKATPKTIL RTMGVKGLTL FHLKSHLQKY RLGKQSGKEG SEQSKDASYL IDGQSGMSVS 120 PRVPAQDVKE SQEVKEALRA QMEVQRRLHE QVEVQKRVQI RMDALQKYID TILENACKLV 180 TEQFASSGFS ISDPDLPELS PGGVMCGPND TLSSSVFNQL SVSSIDSHSP GGKPSPSGIE 240 GPPLLLHKSP ELKRSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_06184A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004956514.1	1e-158	protein PHR1-LIKE 2 isoform X1
Refseq	XP_025804279.1	1e-157	protein PHR1-LIKE 2-like
Swissprot	Q94A57	1e-59	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A368Q049	1e-156	A0A368Q049_SETIT; Uncharacterized protein
TrEMBL	K3ZV10	1e-156	K3ZV10_SETIT; Uncharacterized protein
STRING	Si030441m	1e-157	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-60	G2-like family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_06184A

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]