PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06336A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NF-YB
Protein Properties Length: 195aa    MW: 21744.7 Da    PI: 4.7032
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06336AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB46.49.7e-1538128790
                      NF-YB   7 flPianvsrimkkvlP.......anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvepl 83 
                                +lP a v r++k  l        a+  + kda     e +  fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl
  Oropetium_20150105_06336A  38 ELPKAIVRRLVKDKLAhiaggegAEVIVNKDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEIEFSEFVEPL 121
                                68999999999988862222211344589******************************************************* PP

                      NF-YB  84 kvylkky 90 
                                ++ l+ +
  Oropetium_20150105_06336A 122 RTSLQAF 128
                                *999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-2737128IPR009072Histone-fold
PfamPF008086.1E-1038109IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471137.29E-2239128IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEGEATKESE PQPQATQVQD QDKPAPXXXX XXXXXXXELP KAIVRRLVKD KLAHIAGGEG  60
AEVIVNKDAM AAFAESARIF IHYLSATAND MCKESKRQTI NADDVLKALD EIEFSEFVEP  120
LRTSLQAFVT ELIFGSSDLI FSFALNFLVP EFRNKNAGKR SEANKKQKEK RRKLNEETLS  180
QKENDPADDP ENGD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06336A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310236.14e-76DNA polymerase epsilon subunit 3
TrEMBLA0A0A9DZ169e-75A0A0A9DZ16_ARUDO; Uncharacterized protein
TrEMBLC5X5Y51e-74C5X5Y5_SORBI; Uncharacterized protein
STRINGPavir.Bb01701.1.p4e-75(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.16e-34nuclear factor Y, subunit B11