PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_06412A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

Trihelix

Protein Properties

Length: 339aa MW: 36961 Da PI: 7.558

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_06412A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.8	1.2e-12	25	124	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkr 71 +W+++ + L+ea++ ++ +r+klk +W +++ + + + ++p+qCk+k+e+++kry+++ + + Oropetium_20150105_06412A 25 EWSESGITRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVsahcaedaaasgkPGGNCAKTPNQCKNKIESMKKRYRAESAAVVRA 108 5*****************************9999999999***9888899*****************998876665 PP trihelix 72 .tsessstcpyfdqle 86 + + ++++f +++ Oropetium_20150105_06412A 109 gPAAAGPSWRFFVRMD 124 3577778999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.5E-14	23	124	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MDGLPDAXXX XXXXXXXXPP QKRDEWSESG ITRLLEAYEA KWLLRNRAKL KWSDWVDIAH 60 EVSAHCAEDA AASGKPGGNC AKTPNQCKNK IESMKKRYRA ESAAVVRAGP AAAGPSWRFF 120 VRMDGLLKGP AGPGQAQQQQ AELSNNSIDL RAPAKAETVE VVEADFAAQL PPDAGPVTFS 180 DLVHIDANGG SVPEKADKVD NSVQKESRAA DSDAANVSSP RSKVANEDTE ELDKAWDMPK 240 KRKSTELAIA KSIELLASSF LKVEHARMEM YRETERMRIE AEIKKGEMEL KRTEIMAKTH 300 LQIAKLFAKR LKEGGARTGG SSSVTAEVDT LTKKGENG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_06412A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137592	9e-96	AC137592.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence.
GenBank	AK068834	9e-96	AK068834.1 Oryza sativa Japonica Group cDNA clone:J013159M18, full insert sequence.
GenBank	AK103673	9e-96	AK103673.1 Oryza sativa Japonica Group cDNA clone:J033136A07, full insert sequence.
GenBank	AP005090	9e-96	AP005090.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1065_E04.
GenBank	AP014965	9e-96	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802935.1	1e-164	trihelix transcription factor ASIL1-like
TrEMBL	A0A0A9E152	1e-174	A0A0A9E152_ARUDO; Uncharacterized protein
STRING	Pavir.Ba01421.1.p	1e-165	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7333	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	2e-32	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_06412A