PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_06577A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

SRS

Protein Properties

Length: 331aa MW: 33499.1 Da PI: 8.6567

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_06577A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	219.9	5.4e-68	101	250	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsals 87 g++sCqdCGnqakkdCah+RCRtCCksrgf+C th+kstWvpaakrrerqqqla ++++aaa+ + s r+ +++ +++ +++ Oropetium_20150105_06577A 101 GGVSCQDCGNQAKKDCAHQRCRTCCKSRGFSCPTHIKSTWVPAAKRRERQQQLAVLAASAAATGGAGPSSRDVTKRPRARLSVA 184 6789*****************************************************9999999999999999999999* PP DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + ++ss+++++ + ++++P+evsseavfrcvr++ vd++e+e+aYqt+vsigGhvfkGiL+d G++ Oropetium_20150105_06577A 185 TPTTSSGDQQMVTVAERFPREVSSEAVFRCVRLGPVDQAEAEVAYQTTVSIGGHVFKGILHDVGPH 250 ****************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.0E-64	102	250	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.7E-27	104	146	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.0E-23	201	249	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MAGFPLGGGG HHHHSRDDPA PSSVPPVHPS DAAASFLYAA RAGAGLQLWQ QHEHQHPFYA 60 SNIIRFSSDD PPGGAPSLAG AAASSSSSRG TRGGGGGGVG GGVSCQDCGN QAKKDCAHQR 120 CRTCCKSRGF SCPTHIKSTW VPAAKRRERQ QQLAVLAASA AATGGAGPSS RDVTKRPRAR 180 LSVATPTTSS GDQQMVTVAE RFPREVSSEA VFRCVRLGPV DQAEAEVAYQ TTVSIGGHVF 240 KGILHDVGPH CLASAGGSGP AIEYHHFRHA GDGGSPPHTA AAAGEAGGGG GAGNIIVSSA 300 VVMDPYPTPG PYGGAYAAGA PFFHGGHPRQ *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_06577A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021308557.1	1e-137	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9XGX0	3e-51	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A1B6QDR9	1e-135	A0A1B6QDR9_SORBI; Uncharacterized protein
STRING	GRMZM2G080295_P01	1e-133	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	7e-51	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_06577A

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]