PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06595A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 162aa    MW: 18053.2 Da    PI: 6.9464
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06595AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.82.1e-141391856
                               HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                               +F+ + ++  +++ +LA+ lgL+ rqV +WFqN+Ra++k
  Oropetium_20150105_06595A  1 MFATQTKLEPRQKLQLARDLGLQPRQVAIWFQNKRARWK 39
                               6999**********************************9 PP
2HD-ZIP_I/II102.53.6e-331771793
                HD-ZIP_I/II 17 sFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
                               +F +++kLep++K +lar+Lglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal  + e+L+ke+++L ++l++
  Oropetium_20150105_06595A  1 MFATQTKLEPRQKLQLARDLGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKHALLKQLEK 77
                               599999******************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.993141IPR001356Homeobox domain
SMARTSM003890.0011145IPR001356Homeobox domain
PfamPF000468.2E-12139IPR001356Homeobox domain
SuperFamilySSF466892.61E-13253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-14248IPR009057Homeodomain-like
CDDcd000862.53E-11242No hitNo description
PRINTSPR000318.1E-61221IPR000047Helix-turn-helix motif
PROSITE patternPS0002701639IPR017970Homeobox, conserved site
PRINTSPR000318.1E-62137IPR000047Helix-turn-helix motif
PfamPF021833.3E-134183IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MFATQTKLEP RQKLQLARDL GLQPRQVAIW FQNKRARWKS KQLEREYSAL RDDYDALLCS  60
YESLKKEKHA LLKQLEKLAE MLQEPGPNYS GNANAGDDAR KGAGSACMKE EEFSDVVRHA  120
PYSSLEGGAH FADDDSGALF RPSPQPSAAG FTASGPPDHQ PF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00650PBMTransfer from LOC_Os09g35910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06595A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0872581e-104BT087258.1 Zea mays full-length cDNA clone ZM_BFb0020F23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462710.12e-83homeobox-leucine zipper protein HOX6
SwissprotQ651Z58e-66HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
SwissprotQ9XH358e-66HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBLC5X6575e-82C5X657_SORBI; Uncharacterized protein
STRINGSb02g030660.18e-83(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78733448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-36homeobox 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]