PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06656A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 203aa    MW: 22336.4 Da    PI: 5.3703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06656AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-13127173354
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                ++h e+Er+RRd++N +f  Lr  +P+       +++Ka+ L  A  YI +L
  Oropetium_20150105_06656A 127 ASHVEAERQRRDKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYITEL 173
                                589************************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10127173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15127187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16128187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.25E-12128178No hitNo description
SMARTSM003539.2E-11130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MDELLSPYST FSPPXXXXXX XXXXHAAGHP VIEFAFCEVP EQWLLGDDVV LAKNEEDYYE  60
EVEELWPVAC TLSPFSELSE QPLPPPPXXX XXXXXXLSVV TAAPAAQRPA GKRRGRKPGP  120
RPDGPSASHV EAERQRRDKL NRRFCDLRAA VPTVSRMDKA SLLADAAAYI TELRARVARL  180
EAEAKRASST ATARWDPASS SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-20128183863Transcription factor MYC2
5gnj_B3e-20128183863Transcription factor MYC2
5gnj_E3e-20128183863Transcription factor MYC2
5gnj_F3e-20128183863Transcription factor MYC2
5gnj_G3e-20128183863Transcription factor MYC2
5gnj_I3e-20128183863Transcription factor MYC2
5gnj_M3e-20128183863Transcription factor MYC2
5gnj_N3e-20128183863Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06656A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0065251e-72AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03.
GenBankAP0072541e-72AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08.
GenBankAP0149651e-72AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126171e-72CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462680.12e-66transcription factor MYC2
TrEMBLA0A3L6E3S58e-66A0A3L6E3S5_MAIZE; Transcription factor MYC4
STRINGSb02g030120.17e-66(Sorghum bicolor)
STRINGGRMZM2G107560_P015e-66(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.13e-16bHLH family protein