PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06735A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family M-type_MADS
Protein Properties Length: 192aa    MW: 21528.5 Da    PI: 9.7323
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06735AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.58.7e-192668345
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                               ie+k +r vtfskR+ g++KKA EL  LC+a vav++fs+ g+
  Oropetium_20150105_06735A 26 IEDKAKRLVTFSKRKSGLFKKAGELAQLCGAHVAVMLFSEAGR 68
                               9***************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.8E-261675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.9131676IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-231789IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-171838IPR002100Transcription factor, MADS-box
PfamPF003199.4E-222672IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-173853IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-175374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGRQPSNERA CRPQSKGRQR IQIVYIEDKA KRLVTFSKRK SGLFKKAGEL AQLCGAHVAV  60
MLFSEAGRPF AFGSPSVDSV LRRLSPRAPY PDYEDYDDEA ERAAAEATRQ QAEETWALVD  120
AEKDRMAAIG EKVLEALAPG KRFWWEADAQ QLGPAELPEF TRALMRLRDK VQRHANNMRS  180
DASPTPLLLK Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06735A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813513.11e-53agamous-like MADS-box protein AGL62
TrEMBLA0A3Q8BG295e-54A0A3Q8BG29_BAMOL; MADS75-1
STRINGPavir.J16245.1.p2e-53(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-26AGAMOUS-like 61