PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06755A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family M-type_MADS
Protein Properties Length: 205aa    MW: 23110.1 Da    PI: 10.4722
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06755AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.12.1e-224181343
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                               i+nk +rqvtf+kRrng++KKA ELS LC+a vavi+fs+ 
  Oropetium_20150105_06755A 41 IKNKNRRQVTFCKRRNGLFKKAGELSQLCGAHVAVIVFSEA 81
                               9**************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.4933191IPR002100Transcription factor, MADS-box
SMARTSM004328.6E-233190IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-213284IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-173353IPR002100Transcription factor, MADS-box
PfamPF003197.1E-224182IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-175368IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-176889IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDFPLNEGGE REVSAEAAAT VVVRPAKRTS QGRQRIDITY IKNKNRRQVT FCKRRNGLFK  60
KAGELSQLCG AHVAVIVFSE ASRXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXKDEAAAC  120
RAAVETALRQ EEETKARLVA EKARMKDVGK KVLQAMAGRR FWWEADVDQL GDADLPEFAR  180
ALQRLRDNVQ RHIKELISAA PLLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06755A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811768.15e-47agamous-like MADS-box protein AGL62
TrEMBLA0A0E0E2942e-45A0A0E0E294_9ORYZ; Uncharacterized protein
TrEMBLA0A2S3HIR91e-45A0A2S3HIR9_9POAL; Uncharacterized protein
TrEMBLA0A2T7DXP11e-45A0A2T7DXP1_9POAL; Uncharacterized protein
STRINGPavir.J16245.1.p3e-46(Panicum virgatum)
STRINGOMERI06G15850.14e-46(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-15AGAMOUS-like 61