PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06820A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 70aa    MW: 7541.49 Da    PI: 4.9872
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06820AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like41.92.2e-13429126
                    G2-like  1 kprlrWtpeLHerFveaveqLGGsek 26
                               ++rlrWt+eLHe+Fveav+qLGG++ 
  Oropetium_20150105_06820A  4 RQRLRWTNELHEKFVEAVTQLGGPDS 29
                               59*********************984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-11330IPR009057Homeodomain-like
SuperFamilySSF466891.68E-5330IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-9529IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MAARQRLRWT NELHEKFVEA VTQLGGPDSN KADNKDPGDL LAGLEGSSGL QISEALKLQM  60
EVQRGCMNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06820A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460002.12e-28myb family transcription factor PHL7
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.14e-22G2-like family protein