PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_06864A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 430aa MW: 45821.8 Da PI: 7.1536

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_06864A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.2	8e-05	310	348	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Oropetium_20150105_06864A 310 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 348 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.623	298	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.39E-5	308	352	No hit	No description
SuperFamily	SSF47459	6.02E-11	308	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-8	312	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MMASSSSSSN LSDHQLQDEL PWPPSSPSSL PFAPALHSAN DQWTQPLLML NSSDELEVLP 60 SSQGQHHSSH HLQAASPVIP PQLSSLLMMQ DLGFEWSNCG SADSAAAMLL MSGQQQDGQN 120 KIKDEPPRRE SLNSRSSCAT TAAYHDIVGG GGGAAGLPAA NLDGTVLPSI NISSRPLQKL 180 CPAPPPLPGD AFEILASSRL CKPLLLRQAS SVLLHNGMPL LRSEHVPYGP PPPEAAVHPQ 240 GPCIDNYKMG PLCVVNGIGG GGHHWSAEND ARHEKTALSS SPAPVPKKPR LESRSSASTT 300 TTVVPSFKVR KEKLGDRIAA LQQLVSPFGK TDTASVLMEA IGYIKFLQDQ VEVLTELLKT 360 NTLSGPYLRS SRSKKPKTRQ RVSPSANGEE QEETRPDLRS RGLCLVPLSC TSYVTNENGV 420 WAPPNFSGN*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MMASSSSSSN LSDHQLQDEL PWPPSSPSSL PFAPALHSAN DQWTQPLLML NSSDELEVLP  60
SSQGQHHSSH HLQAASPVIP PQLSSLLMMQ DLGFEWSNCG SADSAAAMLL MSGQQQDGQN  120
KIKDEPPRRE SLNSRSSCAT TAAYHDIVGG GGGAAGLPAA NLDGTVLPSI NISSRPLQKL  180
CPAPPPLPGD AFEILASSRL CKPLLLRQAS SVLLHNGMPL LRSEHVPYGP PPPEAAVHPQ  240
GPCIDNYKMG PLCVVNGIGG GGHHWSAEND ARHEKTALSS SPAPVPKKPR LESRSSASTT  300
TTVVPSFKVR KEKLGDRIAA LQQLVSPFGK TDTASVLMEA IGYIKFLQDQ VEVLTELLKT  360
NTLSGPYLRS SRSKKPKTRQ RVSPSANGEE QEETRPDLRS RGLCLVPLSC TSYVTNENGV  420
WAPPNFSGN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_06864A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025816405.1	1e-165	transcription factor bHLH110
TrEMBL	A0A0A9EPI8	1e-174	A0A0A9EPI8_ARUDO; Uncharacterized protein
STRING	Pavir.Ea00834.1.p	1e-168	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7240	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-41	bHLH family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_06864A