PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06889A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 233aa    MW: 24733.7 Da    PI: 8.2608
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06889AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-094593654
                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
                        HLH  6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54
                               +e+Er+RR++++s  ++L +l+Pk    psk  ++    L  A  YIk+L
  Oropetium_20150105_06889A 45 KEIERKRRQHMKSLCAKLVSLIPKEH-HPSKDtMTQLGSLDVAAAYIKKL 93
                               79**********************64.555556***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1030105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.683993IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-54498No hitNo description
Gene3DG3DSA:4.10.280.101.8E-1244107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-74593IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-64599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MKAKKRSSTD NTAAAAAADD GGKRGGSTSN NSGSSGTTAP VVERKEIERK RRQHMKSLCA  60
KLVSLIPKEH HPSKDTMTQL GSLDVAAAYI KKLKERVEDL QQKRSSAQLL ASVRGGGSSS  120
AAAVATTTTS SDAGSSEEEA AAAAEDESVA PVVEVRHHQD ESSLDVVLIC SVENPFKMHE  180
VVTVLEEEGA EIINANFSVA GRKIFYTIHS RAFSSRIGIE VSRISERLRA LT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14752ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06889A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818432.12e-85transcription factor bHLH162-like
TrEMBLA0A3L6QVK66e-86A0A3L6QVK6_PANMI; Uncharacterized protein
STRINGPavir.Ea00786.1.p1e-88(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.13e-11bHLH family protein