PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06891A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 223aa    MW: 23292.6 Da    PI: 9.0118
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06891AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.1e-083498555
                               HHHHHHHHHHHHHHHHHHHHCTSCCC................TTS-.STCHHHHHHHHHHHHHHH CS
                        HLH  5 hnerErrRRdriNsafeeLrellPkas.............kapskK.lsKaeiLekAveYIksLq 55
                                + +E++RR +++    +L +l+P+a              ++p+k  ++  + L  A  YIk+L+
  Oropetium_20150105_06891A 34 RKDVEKNRRLHMKGLCLKLSSLIPPAAkpasllsappeacSNPNKDtVTQLDHLDNAAAYIKQLK 98
                               5789*********************666************7777777****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512577129No hitNo description
PROSITE profilePS508889.2162997IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1033109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-933110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-53597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.006435103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MKSRKQSSGG SAAAAGEGTT ATHSSGGGCA KLERKDVEKN RRLHMKGLCL KLSSLIPPAA  60
KPASLLSAPP EACSNPNKDT VTQLDHLDNA AAYIKQLKAR IDELKQRRKG GCRELQGGGA  120
AATATTVSAA GGGGVRMPVI EVRYQDGTLE VVLISEAAAG RPFKLHEVIT VLEQEGAEVV  180
SASFSVVGDK IFYTIHSQAL SSRIGLEASR VSERLQDLLC VD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06891A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967963.14e-96transcription factor bHLH168
TrEMBLA0A1E5WHH62e-96A0A1E5WHH6_9POAL; Uncharacterized protein
STRINGSi002847m2e-95(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.15e-17bHLH family protein