PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_07180A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 268aa MW: 28651.8 Da PI: 9.9124

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_07180A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	1e-11	74	118	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR+riNs +++Lr+l+P k ++Ka+ L ++v+ +k L Oropetium_20150105_07180A 74 HSEAERRRRERINSHLATLRSLIPDT-----KQMDKAALLARVVDQVKAL 118 9**********************9.....67*******99988877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.078	69	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.13E-13	73	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-13	74	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-9	74	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-12	75	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00111	82	121	No hit	No description
Gene3D	G3DSA:3.30.70.260	9.6E-4	166	214	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MAAAFRPLLQ EGKTELNPYD GYDPSVYGRP VLLPRQASSA PPAVPVAPPP EMSSSSGSGS 60 GGRSAMEARA LKIHSEAERR RRERINSHLA TLRSLIPDTK QMDKAALLAR VVDQVKALKR 120 KASEVTRTTP PLPPESDQVC VDCYTTGDTA IASAGGTDKV LLYVMASVSC DDRPDLIAGL 180 IQAFRGLRLR ALRADMTSLG GRVQHVFTLC KEEDGGASTG ASLRSLKEAV RQAVAKAASP 240 ETVVYGSSPF LSKRQRILES RYSVMSI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	82	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_07180A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623162.1	1e-104	putative transcription factor bHLH107
TrEMBL	A0A0D9Y3K3	1e-105	A0A0D9Y3K3_9ORYZ; Uncharacterized protein
STRING	OGLUM01G04250.1	1e-106	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3347	36	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	1e-27	bHLH family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_07180A