PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07192A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ERF
Protein Properties Length: 248aa    MW: 27800.4 Da    PI: 4.7603
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07192AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.47.2e-08981242955
                        AP2  29 krfslgkfgtaeeAakaaiaarkkleg 55 
                                kr +lg+f ta eAa a+++a+++++g
  Oropetium_20150105_07192A  98 KRLWLGSFPTALEAAHAYDEAARAMYG 124
                                9***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.93216132IPR001471AP2/ERF domain
SMARTSM003809.5E-693138IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-996133IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-1597134IPR001471AP2/ERF domain
CDDcd000181.14E-1398134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MERVEGGDSS SGGQVRKKRM RRKSTGPDSI AETIKRWKEH NQKHQEESGT RKAPAXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXKRL WLGSFPTALE AAHAYDEAAR  120
AMYGPTARVN FSESSAEANS GFTSALSLLA SNVPPAAQRS DDKDEVESVE TEVHEVKTEM  180
NDDLPSIHVE CKTLEVFQSE ENVLRKDGGV SYDYFHVEDV LEMIIIELNA AKEIEVHGDD  240
GFSLFSY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07192A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8480960.0GQ848096.1 Zoysia japonica cultivar Meyer DREB-like protein 1 (DREB1) mRNA, complete cds.
GenBankGQ8687110.0GQ868711.1 Zoysia japonica cultivar Palisades DREB-like protein 1 (DREB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968294.13e-98dehydration-responsive element-binding protein 2A isoform X1
SwissprotA2WL191e-74DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLA4ZZA11e-117A4ZZA1_9POAL; Dehydration responsive element binding protein
STRINGSi002067m1e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551