PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07262A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 244aa    MW: 26349.7 Da    PI: 9.0311
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07262AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-077196126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                               ykt+lC  f  +G C y d C+FaHg
  Oropetium_20150105_07262A 71 YKTRLCEKFESGGRCAYEDGCTFAHG 96
                               9************************8 PP
2zf-CCCH185.1e-06144161825
                                GGGGTS--TTTTT-SS-S CS
                    zf-CCCH   8 ffartGtCkyGdrCkFaH 25 
                                 ++  GtC++Gd+C++aH
  Oropetium_20150105_07262A 144 EYRDKGTCHFGDKCNYAH 161
                                57777************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.1E-1665103IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-969101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5737098IPR000571Zinc finger, CCCH-type
SMARTSM003560.00267097IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-57196IPR000571Zinc finger, CCCH-type
SMARTSM003560.16137163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5140162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.389141164IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGKKEGNXXX XXXXXXKYRD ASPVIVLPAG SAAARQPQHR SQQREKDQQP ATGVVRAAAD  60
FFVEPPEKVF YKTRLCEKFE SGGRCAYEDG CTFAHGHAEL RPPLPLPPAA RRSRLVMPPV  120
VDGAGEKAAL PPFHYFGVGK VCFEYRDKGT CHFGDKCNYA HASAAVHPAD MRHPKPPEPA  180
MRSVTPPGRA FSAGSGSYAP VAARACPLAG AEGAEQGEVK PTRLELLSRK KLSGIYGDWP  240
EES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07262A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819424.15e-56zinc finger CCCH domain-containing protein 1-like
TrEMBLA0A1E5VJ663e-54A0A1E5VJ66_9POAL; Uncharacterized protein
TrEMBLA0A3L6QWA54e-54A0A3L6QWA5_PANMI; Zinc finger CCCH domain-containing protein 1-like
STRINGSb03g004260.13e-50(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-12C3H family protein