PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07413A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 360aa    MW: 38775 Da    PI: 6.4076
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07413AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12178225355
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                + h  +Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k+Lq
  Oropetium_20150105_07413A 178 QDHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 225
                                67999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.809175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10178225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-18178243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-17179236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.23E-14180229No hitNo description
SMARTSM003533.7E-15181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MATQWFSNMV MDEPSFFHQW QSDALLEQYT EQQIAVAFGH QGEVDQAMAA ALMPQQQYAA  60
AAPAAAEHCR PRKAAKVVNT SWDSCITEQG SPADSSSPTI HSFGGNTATA AFAKAEAQQV  120
SYYGSTAAMP VKAPKQELVD AGGVPAFHVR PVKRSYDAMV ATEAQAASVP SRPASQNQDH  180
ILAERKRREK LSQRFIALSK IVPGLKKMDK ASVLGDAIKY VKQLQEQVKG LEDEARRRPV  240
EAAVLVKKSQ LSADDDDGSS CDENFLGGGE AAGTLPEIEA RVSERTVLVK IHCENRKGAL  300
ITALSEVERL GLAIMNTNVL PFTSSSLDIT IMAMAGDEFC LSVKDIVKKL SQAFKSSSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13179234863Transcription factor MYC2
5gnj_B1e-13179234863Transcription factor MYC2
5gnj_E1e-13179234863Transcription factor MYC2
5gnj_F1e-13179234863Transcription factor MYC2
5gnj_G1e-13179234863Transcription factor MYC2
5gnj_I1e-13179234863Transcription factor MYC2
5gnj_M1e-13179234863Transcription factor MYC2
5gnj_N1e-13179234863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183188ERKRRE
2184189RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07413A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0365520.0BT036552.2 Zea mays full-length cDNA clone ZM_BFb0123D23 mRNA, complete cds.
GenBankEU9565960.0EU956596.1 Zea mays clone 1567551 symbiotic ammonium transporter mRNA, complete cds.
GenBankKJ7268630.0KJ726863.1 Zea mays clone pUT3404 bHLH transcription factor (bHLH137) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661241.10.0transcription factor bHLH18
TrEMBLK4ABY60.0K4ABY6_SETIT; Uncharacterized protein
STRINGSi036393m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-56bHLH family protein