PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07634A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 208aa    MW: 22719.7 Da    PI: 8.1367
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07634AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.41.7e-191451358
                               E--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                       WRKY 13 KevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
                               K+ k++e prsYY+Ct+ gCpvkk vers  d+ ++eitY+ +Hnh
  Oropetium_20150105_07634A  1 KQLKDAESPRSYYKCTHDGCPVKKVVERSF-DGFITEITYKARHNH 45
                               899***************************.*************** PP
2WRKY105.23.5e-33100158159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+WrKYGqK+vkg++ prsYY+Ct  +C+v+k++er+++dp++v +tY+g+Hnh+
  Oropetium_20150105_07634A 100 LDDGYRWRKYGQKVVKGNPRPRSYYKCTADNCNVRKQIERASTDPRCVLTTYTGRHNHD 158
                                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.7E-13148IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-15147IPR003657WRKY domain
SMARTSM007748.9E-14147IPR003657WRKY domain
PfamPF031062.0E-13145IPR003657WRKY domain
PROSITE profilePS5081115.342148IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-3293160IPR003657WRKY domain
PROSITE profilePS5081135.0695160IPR003657WRKY domain
SuperFamilySSF1182902.48E-2895160IPR003657WRKY domain
SMARTSM007741.5E-35100159IPR003657WRKY domain
PfamPF031061.1E-24101158IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
KQLKDAESPR SYYKCTHDGC PVKKVVERSF DGFITEITYK ARHNHLRPPQ RGNDGGDVPA  60
AGIFVEEAVD GXXXXXXXXX XMLHDDHDGD VGRAVDVDLL DDGYRWRKYG QKVVKGNPRP  120
RSYYKCTADN CNVRKQIERA STDPRCVLTT YTGRHNHDPP GRGPEAAAAT TAGSATDHSG  180
PSAMNVAAGA SGTFRQTCGS RPLKEES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-32961601377Probable WRKY transcription factor 4
2lex_A3e-32961601377Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07634A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3638032e-64AK363803.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2019A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792201.14e-80probable WRKY transcription factor 58
SwissprotQ93WU72e-48WRK58_ARATH; Probable WRKY transcription factor 58
TrEMBLA0A2T8I0M73e-78A0A2T8I0M7_9POAL; Uncharacterized protein
TrEMBLA0A3L6TT602e-78A0A3L6TT60_PANMI; Putative WRKY transcription factor 26
STRINGSb01g007480.16e-76(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.15e-50WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]